| Time |
Speaker |
Title |
| 9/14, 3:30pm |
All |
This slot is open for topics that come up during the week |
| 9/14, 11:00am |
Michael Desai
Harvard & KITP |
Statistics of epistasis and pleiotropy |
| 9/14, 9:30am |
Santiago Elena
IBMCP |
Experimental evolution of plant RNA virus interactions[Slides][Podcast][Aud][Cam] |
| 9/13, 2:00pm |
Steve Proulx
UCSB |
Bet-hedging, trans-generational effects, and population dynamics[Podcast][Aud][Cam] |
| 9/13, 11:00am |
Patrick Phillips
Oregon & KITP |
Evolutionary recovery from spontaneous vs segregating deleterious mutations[Podcast][Aud][Cam] |
| 9/13, 9:30am |
Sergey Nuzhdin
USC & KITP |
Evolve and resequence in Drosophila, challenges[Podcast][Aud][Cam] |
| 9/12, 3:30pm |
Klas Udekwu
Stockholm Univ. |
Modeling antimicrobial treatment based on Collateral Network theory |
| 9/12, 11:00am |
Neda Barghi
VU Wien & KITP |
Genomic signatures of polygenic adaptation in Drosophila simulans[Podcast][Aud][Cam] |
| 9/12, 9:30am |
Michael Doebeli
UBC |
From individual-level processes to large-scale patterns in ecology and evolution[Podcast][Aud][Cam] |
| 9/11, 3:30pm |
All Participants |
Informal discussion of the architecture of adaptation: many versus few locus models[Podcast][Aud][Cam] |
| 9/11, 11:00am |
Christian Schlotterer
VU Wien & KITP |
Temperature effects on gene expression in Drosophila[Podcast][Aud][Cam] |
| 9/11, 9:30am |
Ben Good
Berkeley & KITP |
The population-genetic environment of the gut microbiome[Podcast][Aud][Cam] |
| 9/08, 11:00am |
Klas Udekwu
Stockholm Univ. |
Modeling antimicrobial treatment based on Collateral Network theory |
| 9/08, 9:30am |
Fernanda Pinheiro
Univ. of Cologne & KITP |
Adaptive genome evolution by punctuated fitness waves[Podcast][Aud][Cam] |
| 9/07, 3:30pm |
All |
This slot is open for topics that come up during the week |
| 9/07, 11:00am |
Robert Kofler
VU Wien & KITP |
An open problem with transposable element abundance[Slides][Podcast][Aud][Cam] |
| 9/07, 9:30am |
Wolfram Moebius
Exeter |
Front dynamics and evolution associated with spatial spread in heterogeneous environments[Slides][Podcast][Aud][Cam] |
| 9/06, 11:00am |
Ivana Cvijovic
Harvard |
The effect of background selection of mutational trajectories and genetic diversity[Podcast][Aud][Cam] |
| 9/06, 9:30am |
Carolin Kosiol
VU Wien |
Modeling evolutionary trajectories[Podcast][Aud][Cam] |
| 9/05, 3:30pm |
All |
This slot is open for topics that come up during the week |
| 9/05, 11:00am |
Ben Good
Berkeley & KITP |
Eco-evolutionary dynamics in consumer-resource models[Podcast][Aud][Cam] |
| 9/05, 9:30am |
Patrick Phillips
Oregon & KITP |
Experimental evolution and the evolution of genetic architecture[Slides][Podcast][Aud][Cam] |
| 9/01, 9:30am |
Michael Desai
Harvard & KITP |
The dynamics of adaptation from new mutations and from standing variation: stories from E. coli and yeast[Slides][Podcast][Aud][Cam] |
| 8/31, 3:30pm |
All |
This slot is open for topics that come up during the week |
| 8/31, 11:00am |
Cassandra Extavour
Harvard & KITP |
Is QTL analysis really good at predicting causal loci of evolutionary change?[Podcast][Aud][Cam] |
| 8/31, 9:30am |
Wenying Shou
Fred Hutch |
Evolution of microbial community function[Podcast][Aud][Cam] |
| 8/30, 3:30pm |
Calin Plesa
UCLA |
Exploring Protein Functional Landscapes using Multiplexed Gene Synthesis and Characterization[Slides][Podcast][Aud][Cam] |
| 8/30, 9:30am |
Andreas Futschik
JKU Linz & KITP |
Statistical Methods for Experimental Evolution[Podcast][Aud][Cam] |
| 8/29, 3:30pm |
All |
This slot is open for topics that come up during the week |
| 8/29, 11:00am |
Henrique Teotónio
ENS Paris & KITP |
Understanding natural selection on pre-existing genetic diversity in variable environments[Slides][Podcast][Aud][Cam] |
| 8/29, 9:30am |
Joachim Krug
Univ. of Cologne & KITP |
Epistasis and genotypic complexity in Fisher's geometric model[Slides][Podcast][Aud][Cam] |
| 8/28, 11:00am |
Alan Perelson
LANL & KITP |
How we cured HCV and a bit of HCV evolution and drug resistance[Slides][Podcast][Aud][Cam] |
| 8/28, 9:30am |
Olivier Tenaillon
INSERM & KITP |
Some phenotypic bases of epistasis[Podcast][Aud][Cam] |
| 8/25, 11:00am |
Ned Wingreen
Princeton |
Building a biofilm the Vibrio cholerae way[Slides][Podcast][Aud][Cam] |
| 8/25, 9:30am |
Cassandra Extavour
Harvard & KITP |
Establishing Hawaiian Drosophila as as study system for eco-evo-dynamics[Podcast][Aud][Cam] |
| 8/24, 3:30pm |
All |
This slot is open for topics that come up during the week |
| 8/24, 11:00am |
Maud Tenaillon
Univ. of Paris-Sud & KITP |
Exploring the genetic determinants of maize phenotypic evolution[Slides][Podcast][Aud][Cam] |
| 8/24, 9:30am |
Christian Schlötterer
VU Wien |
What can be learned about adaptation from E&R experiments in Drosophila?[Podcast][Aud][Cam] |
| 8/23, 2:00pm |
Rees Kassen
U. Ottawa & KITP |
From so simple a beginning: Experimental evolution of diversity in
Pseudomonas populations[Slides][Podcast][Aud][Cam] |
| 8/23, 11:00am |
Tony Long
UCI & KITP |
What is the molecular basis of adaptation in sexual outbreds?[Podcast][Aud][Cam] |
| 8/23, 9:30am |
Daniel Fisher
Stanford |
Eco-Evo Dynamics in High Dimensions |
| 8/22, 11:00am |
Aneil Agrawal
Univ. of Toronto & KITP |
The physical environment mediates how sexual interactions affect purging, adaptation, and sexual phenotypes[Podcast][Aud][Cam] |
| 8/22, 9:30am |
David Nelson
Harvard & KITP |
Structured environments, spatial gene drives and pushed genetic waves[Slides][Podcast][Aud][Cam] |
| 8/21, 3:45pm |
Aleksandra Walczak
ENS Paris & KITP |
Analyzing Immune repertories part 2[Slides][Podcast][Aud][Cam] |
| 8/21, 11:00am |
Thierry Mora
ENS Paris & KITP |
Evolution and ecology of well-adapted immune systems[Slides][Podcast][Aud][Cam] |
| 8/18, 1:00pm |
Students |
Presentations from QBIO School students, cont'd[Podcast][Aud][Cam] |
| 8/18, 11:00am |
Students |
Presentations from QBIO School students[Podcast][Aud][Cam] |
| 8/18, 9:30am |
Rich Lenski
MSU |
Back to the Freezer: Assorted Experiments, Old and New[Podcast][Aud][Cam] |
| 8/17, 3:30pm |
Oskar Hallatschek
Berkeley & KITP |
Recurrent jackpot events (typically) favor majorities, cont'd[Podcast][Aud][Cam] |
| 8/17, 11:00am |
Philipp Messer
Cornell & KITP |
Genetic manipulation of entire populations with CRISPR gene drives[Slides][Podcast][Aud][Cam] |
| 8/17, 9:30am |
Olivier Tenaillon
INSERM & KITP |
Genomics of E. coli adaptation in vitro, in vivo, in infectio[Podcast][Aud][Cam] |
| 8/16, 2:00pm |
All |
This slot is open for topics that come up during the week |
| 8/16, 11:00am |
Paul Rainey
ESPCI Paris & KITP |
Big fleas, little fleas, lesser fleas[Podcast][Aud][Cam] |
| 8/16, 9:30am |
Oskar Hallatschek
Berkeley & KITP |
Recurrent jackpot events (typically) favor majorities[Podcast][Aud][Cam] |
| 8/15, 3:30pm |
Claudia Bank
IGC & KITP |
Fitness landscapes and the predictability of evolution[Slides][Podcast][Aud][Cam] |
| 8/15, 11:00am |
Rich Lenski
MSU |
Dynamics of Adaptation and Genome Evolution in a Long-Term Experiment with E. coli[Slides][Podcast][Aud][Cam] |
| 8/15, 9:30am |
Ned Wingreen
Princeton |
Modeling microbial diversity[Slides][Podcast][Aud][Cam] |
| 08/14 12:15pm |
Terry Hwa
UCSD |
Re-learning how to do phenomenological theories and why this is so important in biology[Podcast][Aud][Cam]
KITP Blackboard Lunch |
| 8/14, 11:00am |
Pankaj Mehta
BU & KITP |
Statistical physics approaches to community ecology[Slides][Podcast][Aud][Cam] |
| 8/14, 9:30am |
Aneil Agrawal
Univ. of Toronto & KITP |
Experimental evolution in flies: plasticity evolution & sexual interactions[Podcast][Aud][Cam] |
| 8/11, 11:00am |
Daniel Huson
Univ. Tübingen |
Metagenome analysis and assembly[Slides][Podcast][Aud][Cam] |
| 8/11, 9:30am |
Alfred Spormann
Stanford |
Ecological Consequences of Metabolic Pathways[Podcast][Aud][Cam] |
| 8/10, 3:30pm |
Terry Hwa
UCSD |
What does chemotaxis do for bacteria: beyond mechanisms and buzz words, cont'd[Podcast][Aud][Cam] |
| 8/10, 11:00am |
Joshua Weitz
Georgia Tech |
Space-time Frontiers of Marine Viral Ecology[Slides][Podcast][Aud][Cam] |
| 8/10, 9:30am |
Gurol Suel
UCSD |
Electrical signaling in bacterial communities[Podcast][Aud][Cam] |
| 8/09 6:15pm |
Rachel Dutton
UCSD & KITP |
The Wonderful Microbial World of Cheese[Podcast][Aud][Cam]
KITP Chalk Talk |
| 8/09, 2:00pm |
All |
This slot is open for topics that come up during the week |
| 8/09, 11:00am |
Terry Hwa
UCSD |
What does chemotaxis do for bacteria: beyond mechanisms and buzz words[Podcast][Aud][Cam] |
| 8/09, 9:30am |
Molly Burke
Oregon State & KITP |
What can we learn from experimental evolution in sexual populations?[Slides][Podcast][Aud][Cam] |
| 8/08, 3:30pm |
Michael Lässig
Univ. of Cologne & KITP |
Adaptive traits of influenza proteins[Podcast][Aud][Cam] |
| 8/08, 1:30pm |
Daniel Huson
Univ. Tübingen |
Tutorial: Metagenomic analysis with MEGAN[Podcast][Aud][Cam] |
| 8/08, 11:00am |
Paul Turner
Yale |
Using phage to select for evolution of reduced virulence in pathogenic bacteria[Slides][Podcast][Aud][Cam] |
| 8/08, 9:30am |
Joshua Weitz
Georgia Tech |
Synergistic Elimination of Bacterial Pathogens by Phage and the Innate Immune System[Slides][Podcast][Aud][Cam] |
| 8/07, 11:00am |
Alfred Spormann
Stanford |
How Micobes Use Energy[Podcast][Aud][Cam] |
| 8/07, 9:30am |
Aleksandra Walczak
ENS Paris & KITP |
Analyzing immune repertoires[Slides][Podcast][Aud][Cam] |
| 8/04, 11:00am |
Sasha Levy
Stony Brook |
The dynamics of adaptive genetic diversity during the early stages of clonal evolution[Slides][Podcast][Aud][Cam] |
| 8/04, 9:30am |
Andrew Murray
Harvard |
Does experimental evolution tell us anything useful?[Slides][Podcast][Aud][Cam] |
| 8/03, 2:00pm |
Bruce Levin
(Emory)
Rees Kassen
(U. Ottawa)
Lin Chao
(UCSD) |
Informal discussion of topics related to antibiotic resistance[Podcast][Aud][Cam] |
| 8/03, 11:00am |
Greg Lang
Lehigh Univ. |
Yeast experimental evolution: sequence dynamics, targets of selection, an example of synergistic epistasis, and maybe some ploidy stuff too[Slides][Podcast][Aud][Cam] |
| 8/03, 9:30am |
Shelley Copley
Colorado |
Metabolic innovation in microbial communities: who gets to play?[Podcast][Aud][Cam] |
| 8/02, 2:00pm |
Olin Silander
Univ. of Basel |
The evolution of bacterial gene regulation[Slides][Podcast][Aud][Cam] |
| 8/02, 11:00am |
Rees Kassen
U. Ottawa |
The sounds of silence: Fitness effects of synonymous mutations in a gene under selection[Slides][Podcast][Aud][Cam] |
| 8/02, 9:30am |
Lin Chao
UCSD |
Theoretical and experimental study of the effects of non-genetic damage on cellular aging, lineage immortality, and fitness variance in a bacterial population[Podcast][Aud][Cam] |
| 8/01, 2:00pm |
Thomas Julou
ETH Zurich |
Stochastic gene expression in changing environments and why slackers persist[Podcast][Aud][Cam] |
| 8/01, 11:00am |
Josh Quick
Univ. Birmingham |
How to deploy a portable lab for the surveillance of emerging infectious diseases[Slides][Podcast][Aud][Cam] |
| 8/01, 9:30am |
Erik Van Nimwegen
Univ. of Basel |
How do prokaryotic genomes evolve? Of SNPs, phylogenies, recombination, and population structure. |
| 7/31, 11:00am |
Richard Neher
MPI-EB & KITP |
HIV-1 evolution, immune escape and latency[Podcast][Aud][Cam] |
| 7/31, 9:30am |
Otto Cordero
MIT |
The Structure-Function Mapping of ?-Scale Microbial Ecosystems[Podcast][Aud][Cam] |
| 7/28, 11:00am |
Silvia De Monte
IBENS Paris |
Self-organized Assortment and the Evolution of Collective Function[Slides][Podcast][Aud][Cam] |
| 7/28, 9:30am |
Lizzy Wilbanks
UCSB |
The Wild Microbe: Challenges, joys and tools for the microbial world[Podcast][Aud][Cam] |
| 7/27, 11:00am |
Seppe Kuehn
Univ. of Illinois & KITP |
Constraints on Communities and Characters[Slides][Podcast][Aud][Cam] |
| 7/27, 9:30am |
Otto Cordero
MIT |
Microbial Genome Evolution[Slides][Podcast][Aud][Cam] |
| 7/26, 11:30am |
Bruce Levin
Emory & KITP |
Excursions into the Population and Evolutionary Dynamics of Bacteriophage[Slides][Podcast][Aud][Cam] |
| 7/26, 9:30am |
Rachel Dutton
UCSD & KITP |
Deconstucting and Reconstructing Microbial Communities Using Cheese[Podcast][Aud][Cam] |
| 7/25, 3:45pm |
Tim Cooper
U Houston |
Mutation interactions and the repeatability, evolvability and basis of adaptation in experimentally evolved bacteria[Podcast][Aud][Cam] |
| 7/25, 11:00am |
Erdal Toprak
UT Southwestern & KITP |
Molecular Evolution of Antibiotic Resistance[Podcast][Aud][Cam] |
| 7/25, 9:30am |
Bruce Levin
Emory & KITP |
A Personal (biased) Perspective on Microbiology: Some History, Some Cool Experiments, and Opinions about Where the Action is[Slides][Podcast][Aud][Cam] |
| 7/24, 2:00pm |
All Students and Participants |
Orientation meeting for workshop |
| 7/24, 1:30pm |
All Students |
Safety instructions & project presentation
|
| 7/24, 10:30am |
Paul Rainey
ESPCI Paris & KITP |
Overview talk/kick-off[Podcast][Aud][Cam] |
| 7/24, 10:00am |
All Students and Participants |
Introduction with the rest of the program |
7/17, 9:30am |
All Students |
Organizational meeting with students |
