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KITP Program: Interactions and Co-evolution between Viruses and Immune Systems
(Sep 24 - Oct 11, 2024)
Coordinators: Michael Desai, Thierry Mora, and Armita Nourmohammad

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Speakers: Please contact us about file upload for your slides.

Time Speaker Title
9/24, 9:00am Richard Neher
Basel University
Evolution of SARS-CoV-2, immune escape, and the emergence variants of concern[Slides][Video][CC]
9/24, 10:45am Shenshen Wang
UCLA
How humoral immunity keeps up with an evolving target[Embargoed]
9/25, 9:00am Angela Phillips
UCSF
Biophysical constraints on antibody affinity maturation[Video][CC]
9/25, 10:45am Phil Bradley
Fred Hutch
Prediction and Design of T Cell Receptor Interactions[Video][CC]
9/26, 9:00am Thierry Mora
ENS/CNRS
Detecting viral footprints in immune repertoires[Video][CC]
9/26, 10:45am Angelina Bilate
Rockefeller University
Antigen recognition by intestinal T lymphocytes[Video][CC]
9/27, 9:00am Michael Desai
Harvard University
Compensatory epistasis and the evolution of immune escape in Omicron BA.1[Video][CC]
9/27, 10:45am Mikhail Pogorelyy
St Jude Childrens Hospital
Deep, quantitative, and affordable paired TCR repertoire sequencing[Video]
9/27, 11:25am Asya Minervina
St Jude Childrens Hospital
Engineering specificity: defining rules of TCR recognition[Video]
9/30, 9:00am Arup Chakraborty
MIT
Feedback loops in the recall antibody response[Embargoed]
9/30, 10:45am Veronika Zarnitsyna
Emory
CD8 T Cell Immune Response to Influenza and Viral Immune Evasion[Video][CC]
9/30, 12:15pm Aleksandra Walczak
ENS Paris
When is viral-immune coevolution stable? [Video]
KITP Blackboard Lunch
10/01, 9:00am Armita Nourmohammad
University of Washington
Learning the shape of the immune and protein universe[Video][CC]
10/01, 10:45am John Tsang
Yale University
Immune Setpoints and Immune Health[Video][CC]
10/02, 9:00am Gabriel Victora
Rockefeller University
Replaying germinal center evolution[Video][CC]
10/02, 10:45am William DeWitt
University of Washington
Effective theories and response functions for germinal center evolutionary dynamics[Video][CC]
10/03, 9:00am Emma Hodcroft
Swiss Insitute of Tropical and Public Health
Evolution & Circulation of Enterovirus D68[Video][CC]
10/03, 10:45am Nicholas Wu
UIUC
Deciphering antibody sequences[Video][CC]
Anton Zilman's Symposium
10/04, 9:00am Gregoire Altan-Bonnet
NIH
Anton Zilman's Symposium: A hole in our understanding of antigenicity[Embargoed]
10/04, 10:00am Thomas Hofer
DKFZ, Heidelberg
Anton Zilman's Symposium: Detecting and quantifying selection in somatic stem cells[Video][CC]
10/04, 11:10am Rob de Boer
Utrecht University
Anton Zilman's Symposium: How herd immunity mitigated a deadly second wave of COVID-19 in Manaus[Video][CC]
10/04, 1:00pm Participants Tribute to Anton Zilman[Video]
10/04, 1:30pm Carmen Molina Paris
Los Alamos National Lab
Anton Zilman's Symposium: Quantification of heterogeneity in CD8+ T cell responses to vaccine proteins: an MHC-guided perspective[Video][CC]
10/04, 2:50pm Yuval Elhanati
Memorial Sloan Kettering Cancer Center
Anton Zilman's Symposium: Repertoire sequence space and cancer immune editing: thoughts on co-evolution of the adaptive immune system and the tumor neoantigens[Video][CC]

10/07, 9:00am Erick Matsen
Fred Hutch
Deconvolving mutation and selection in antibody evolution using neural networks trained on large-scale repertoire data[Video][CC]
10/07, 10:45am Michael Lassig & Matthijs Meijers
University of Cologne
From molecular recognition to population immunity[Video][CC]
10/08, 9:00am Tyler Starr
Utah
Molecular evolution of SARS-CoV-2 and related bat coronaviruses[Video][CC]
10/08, 10:45am Trevor Bedford
Fred Hutch
Viral evolution, fitness and forecasting[Video][CC]
10/09, 9:00am Nihal Altan-Bonnet
NIH
When viruses infect hosts as populations[Embargoed]
10/09, 10:45am Jose Borghans
Utrecht University
Dynamic maintenance of immunological memory[Video][CC]
10/10, 9:00am Ivanna Cvijovic
Stanford
Dynamics of antibody memory formation in the human immune response[Video][CC]
10/10, 10:45am Sarah Cobey
University of Chicago
Vaccination and immune memory dynamics across scales[Embargoed]
10/11, 9:00am Barbara Bravi
Imperial
Machine learning-based models of antibody binding affinity and specificity[Embargoed]
10/11, 10:45am Andreas Tiffeau-Mayer
UCL
Statistical insights into the immune receptor code[Slides][Video][CC]
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